Geobacillus thermoglucosidasius C56-YS93

DOE Joint Genome Institute

Genome Size: 3.9 megabases, GC Content: 43.8%, Released Date: April 20, 2010 #20387

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg00056, whole genome shotgun sequence
NZ_ADNQ01000001
662.6 KB
732 CDS

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ctg00043, whole genome shotgun sequence
NZ_ADNQ01000002
317.7 KB
329 CDS

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ctg00055, whole genome shotgun sequence
NZ_ADNQ01000003
279.8 KB
293 CDS

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ctg00048, whole genome shotgun sequence
NZ_ADNQ01000004
203.9 KB
209 CDS

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ctg00076, whole genome shotgun sequence
NZ_ADNQ01000005
161.1 KB
161 CDS

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ctg00071, whole genome shotgun sequence
NZ_ADNQ01000006
156.4 KB
159 CDS

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ctg00047, whole genome shotgun sequence
NZ_ADNQ01000007
156.2 KB
157 CDS

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ctg00064, whole genome shotgun sequence
NZ_ADNQ01000008
120.8 KB
102 CDS

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ctg00038, whole genome shotgun sequence
NZ_ADNQ01000009
99.3 KB
105 CDS

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ctg00063, whole genome shotgun sequence
NZ_ADNQ01000010
96.7 KB
93 CDS

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ctg00042, whole genome shotgun sequence
NZ_ADNQ01000011
92.0 KB
91 CDS

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ctg00059, whole genome shotgun sequence
NZ_ADNQ01000012
91.5 KB
99 CDS

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ctg00032, whole genome shotgun sequence
NZ_ADNQ01000013
69.6 KB
64 CDS

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ctg00062, whole genome shotgun sequence
NZ_ADNQ01000014
68.9 KB
72 CDS

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ctg00053, whole genome shotgun sequence
NZ_ADNQ01000015
67.2 KB
71 CDS

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ctg00041, whole genome shotgun sequence
NZ_ADNQ01000016
62.9 KB
74 CDS

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ctg00075, whole genome shotgun sequence
NZ_ADNQ01000017
60.2 KB
57 CDS

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ctg00080, whole genome shotgun sequence
NZ_ADNQ01000018
58.7 KB
61 CDS

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ctg00050, whole genome shotgun sequence
NZ_ADNQ01000019
56.9 KB
50 CDS

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ctg00066, whole genome shotgun sequence
NZ_ADNQ01000020
56.3 KB
72 CDS

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ctg00067, whole genome shotgun sequence
NZ_ADNQ01000021
51.4 KB
54 CDS

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ctg00052, whole genome shotgun sequence
NZ_ADNQ01000022
51.2 KB
55 CDS

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ctg00058, whole genome shotgun sequence
NZ_ADNQ01000023
49.3 KB
52 CDS

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ctg00069, whole genome shotgun sequence
NZ_ADNQ01000024
48.9 KB
45 CDS

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ctg00045, whole genome shotgun sequence
NZ_ADNQ01000025
48.2 KB
45 CDS

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ctg00079, whole genome shotgun sequence
NZ_ADNQ01000026
46.2 KB
49 CDS

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ctg00044, whole genome shotgun sequence
NZ_ADNQ01000027
44.6 KB
51 CDS

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ctg00057, whole genome shotgun sequence
NZ_ADNQ01000028
41.2 KB
67 CDS

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ctg00040, whole genome shotgun sequence
NZ_ADNQ01000029
36.9 KB
41 CDS

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ctg00070, whole genome shotgun sequence
NZ_ADNQ01000030
33.3 KB
29 CDS

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ctg00054, whole genome shotgun sequence
NZ_ADNQ01000031
32.3 KB
39 CDS

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ctg00060, whole genome shotgun sequence
NZ_ADNQ01000032
29.3 KB
33 CDS

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ctg00065, whole genome shotgun sequence
NZ_ADNQ01000033
28.2 KB
18 CDS

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ctg00072, whole genome shotgun sequence
NZ_ADNQ01000034
28.1 KB
26 CDS

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ctg00039, whole genome shotgun sequence
NZ_ADNQ01000035
24.7 KB
21 CDS

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ctg00051, whole genome shotgun sequence
NZ_ADNQ01000036
23.2 KB
26 CDS

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ctg00046, whole genome shotgun sequence
NZ_ADNQ01000037
22.8 KB
20 CDS

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ctg00074, whole genome shotgun sequence
NZ_ADNQ01000038
21.2 KB
23 CDS

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ctg00078, whole genome shotgun sequence
NZ_ADNQ01000039
20.8 KB
17 CDS

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ctg00001, whole genome shotgun sequence
NZ_ADNQ01000040
20.0 KB
24 CDS

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ctg00068, whole genome shotgun sequence
NZ_ADNQ01000041
15.7 KB
15 CDS

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ctg00081, whole genome shotgun sequence
NZ_ADNQ01000042
15.7 KB
15 CDS

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ctg00073, whole genome shotgun sequence
NZ_ADNQ01000043
14.0 KB
18 CDS

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ctg00049, whole genome shotgun sequence
NZ_ADNQ01000044
13.5 KB
11 CDS

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ctg00037, whole genome shotgun sequence
NZ_ADNQ01000045
13.0 KB
19 CDS

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ctg00112, whole genome shotgun sequence
NZ_ADNQ01000046
10.3 KB
12 CDS

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ctg00077, whole genome shotgun sequence
NZ_ADNQ01000047
9.7 KB
8 CDS

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ctg00031, whole genome shotgun sequence
NZ_ADNQ01000048
8.9 KB
10 CDS

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ctg00114, whole genome shotgun sequence
NZ_ADNQ01000049
8.6 KB
7 CDS

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ctg00113, whole genome shotgun sequence
NZ_ADNQ01000050
8.6 KB
10 CDS

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ctg00061, whole genome shotgun sequence
NZ_ADNQ01000051
6.0 KB
8 CDS

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ctg00115, whole genome shotgun sequence
NZ_ADNQ01000052
5.6 KB
5 CDS

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ctg00116, whole genome shotgun sequence
NZ_ADNQ01000053
4.0 KB
6 CDS

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ctg00117, whole genome shotgun sequence
NZ_ADNQ01000054
4.0 KB
8 CDS

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ctg00118, whole genome shotgun sequence
NZ_ADNQ01000055
3.9 KB
6 CDS

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ctg00119, whole genome shotgun sequence
NZ_ADNQ01000056
3.8 KB
7 CDS

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ctg00002, whole genome shotgun sequence
NZ_ADNQ01000057
3.6 KB
4 CDS

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ctg00120, whole genome shotgun sequence
NZ_ADNQ01000058
3.3 KB
5 CDS

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ctg00121, whole genome shotgun sequence
NZ_ADNQ01000059
3.3 KB
4 CDS

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ctg00122, whole genome shotgun sequence
NZ_ADNQ01000060
3.3 KB
0 CDS

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ctg00123, whole genome shotgun sequence
NZ_ADNQ01000061
3.1 KB
3 CDS

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ctg00124, whole genome shotgun sequence
NZ_ADNQ01000062
3.0 KB
7 CDS

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ctg00128, whole genome shotgun sequence
NZ_ADNQ01000063
2.8 KB
3 CDS

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ctg00125, whole genome shotgun sequence
NZ_ADNQ01000064
2.8 KB
1 CDS

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ctg00126, whole genome shotgun sequence
NZ_ADNQ01000065
2.7 KB
4 CDS

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ctg00131, whole genome shotgun sequence
NZ_ADNQ01000066
2.4 KB
2 CDS

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ctg00129, whole genome shotgun sequence
NZ_ADNQ01000067
2.3 KB
3 CDS

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ctg00130, whole genome shotgun sequence
NZ_ADNQ01000068
2.1 KB
2 CDS

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ctg00127, whole genome shotgun sequence
NZ_ADNQ01000069
2.1 KB
4 CDS

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ctg00132, whole genome shotgun sequence
NZ_ADNQ01000070
2.0 KB
0 CDS

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ctg00133, whole genome shotgun sequence
NZ_ADNQ01000071
2.0 KB
2 CDS

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ctg00107, whole genome shotgun sequence
NZ_ADNQ01000072
1.9 KB
3 CDS

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ctg00020, whole genome shotgun sequence
NZ_ADNQ01000073
1.8 KB
1 CDS

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ctg00135, whole genome shotgun sequence
NZ_ADNQ01000074
1.6 KB
0 CDS

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ctg00134, whole genome shotgun sequence
NZ_ADNQ01000075
1.3 KB
1 CDS

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ctg00097, whole genome shotgun sequence
NZ_ADNQ01000076
1.3 KB
3 CDS

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ctg00028, whole genome shotgun sequence
NZ_ADNQ01000077
1.2 KB
2 CDS

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ctg00099, whole genome shotgun sequence
NZ_ADNQ01000078
1.2 KB
2 CDS

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ctg00005, whole genome shotgun sequence
NZ_ADNQ01000079
1.1 KB
2 CDS

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ctg00103, whole genome shotgun sequence
NZ_ADNQ01000080
1.0 KB
2 CDS

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ctg00015, whole genome shotgun sequence
NZ_ADNQ01000081
999 bytes
1 CDS

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ctg00098, whole genome shotgun sequence
NZ_ADNQ01000082
993 bytes
1 CDS

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ctg00029, whole genome shotgun sequence
NZ_ADNQ01000083
982 bytes
2 CDS

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ctg00023, whole genome shotgun sequence
NZ_ADNQ01000084
943 bytes
2 CDS

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ctg00024, whole genome shotgun sequence
NZ_ADNQ01000085
941 bytes
2 CDS

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ctg00106, whole genome shotgun sequence
NZ_ADNQ01000086
812 bytes
0 CDS

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ctg00007, whole genome shotgun sequence
NZ_ADNQ01000087
808 bytes
0 CDS

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ctg00087, whole genome shotgun sequence
NZ_ADNQ01000088
771 bytes
0 CDS

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ctg00084, whole genome shotgun sequence
NZ_ADNQ01000089
758 bytes
0 CDS

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ctg00100, whole genome shotgun sequence
NZ_ADNQ01000090
750 bytes
1 CDS

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ctg00096, whole genome shotgun sequence
NZ_ADNQ01000091
678 bytes
0 CDS

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ctg00088, whole genome shotgun sequence
NZ_ADNQ01000092
617 bytes
0 CDS

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ctg00085, whole genome shotgun sequence
NZ_ADNQ01000093
603 bytes
1 CDS

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ctg00110, whole genome shotgun sequence
NZ_ADNQ01000094
567 bytes
0 CDS

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ctg00021, whole genome shotgun sequence
NZ_ADNQ01000095
519 bytes
1 CDS

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ctg00025, whole genome shotgun sequence
NZ_ADNQ01000096
512 bytes
0 CDS

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ctg00012, whole genome shotgun sequence
NZ_ADNQ01000097
511 bytes
2 CDS

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Taxonomy

External Links

Geobacillus thermoglucosidasius C56-YS93

Search Genome

Sequences

PubMed Search for Geobacillus thermoglucosidasius C56-YS93

Related Genomes