Gluconacetobacter diazotrophicus PAl 5

FAPERJ - RioGene

Genome Size: 3.96 megabases, GC Content: 66.3%, Released Date: Dec. 5, 2007 #17047

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010125
3.8 MB
3778 CDS

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plasmid pGDIPal5I
NC_010124
37.9 KB
53 CDS

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plasmid pGDIPal5II
NC_010123
16.2 KB
21 CDS

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References

Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5
Bertalan,M., Albano,R., de Padua,V., Rouws,L., Rojas,C., Hemerly,A., Teixeira,K., Schwab,S., Araujo,J., Oliveira,A., Franca,L., Magalhaes,V., Alqueres,S., Cardoso,A., Almeida,W., Loureiro,M.M., Nogueira,E., Cidade,D., Oliveira,D., Simao,T., Macedo,J., Valadao,A., Dreschsel,M., Freitas,F., Vidal,M., Guedes,H., Rodrigues,E., Meneses,C., Brioso,P., Pozzer,L., Figueiredo,D., Montano,H., Junior,J., de Souza Filho,G., Martin Quintana Flores,V., Ferreira,B., Branco,A., Gonzalez,P., Guillobel,H., Lemos,M., Seibel,L., Macedo,J., Alves-Ferreira,M., Sachetto-Martins,G., Coelho,A., Santos,E., Amaral,G., Neves,A., Pacheco,A.B., Carvalho,D., Lery,L., Bisch,P., Rossle,S.C., Urmenyi,T., Rael Pereira,A., Silva,R., Rondinelli,E., von Kruger,W., Martins,O., Baldani,J.I. and Ferreira,P.C. BMC Genomics 10, 450 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Gluconacetobacter diazotrophicus PAl 5

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Sequences

References

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