Gluconacetobacter xylinus NBRC 3288

Yamaguchi Univ., Japan

Genome Size: 0.51 megabases, Released Date: Sept. 4, 2009 #18124

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

plasmid pGXY010 DNA, complete genome, whole genome shotgun sequence
NZ_BABN01000001
249.4 KB
0 CDS

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References

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus
Azuma,Y., Hosoyama,A., Matsutani,M., Furuya,N., Horikawa,H., Harada,T., Hirakawa,H., Kuhara,S., Matsushita,K., Fujita,N. and Shirai,M. Nucleic Acids Res. (2009) In press
PubMed, PubGet, HubMed
Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus
Azuma,Y., Hosoyama,A., Matsutani,M., Furuya,N., Horikawa,H., Harada,T., Hirakawa,H., Kuhara,S., Matsushita,K., Fujita,N. and Shirai,M. Nucleic Acids Res. (2009) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Gluconacetobacter xylinus NBRC 3288

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Sequences

References

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