Haemophilus influenzae 86-028NP

Columbus Children's Research Institute and The Ohio State University, Pediatrics, USA

Genome Size: 1.9 megabases, GC Content: 38.2%, Released Date: April 23, 2004 #17053

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_007146
1.8 MB
1792 CDS

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References

Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20
Harrison,A., Dyer,D.W., Gillaspy,A., Ray,W.C., Mungur,R., Carson,M.B., Zhong,H., Gipson,J., Gipson,M., Johnson,L.S., Lewis,L., Bakaletz,L.O. and Munson,R.S. Jr. J. Bacteriol. 187 (13), 4627-4636 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Haemophilus influenzae 86-028NP

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Sequences

References

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