Haemophilus influenzae PittAA

Allegheny-Singer Research Institute (ASRI)

Genome Size: 1.9 megabases, GC Content: 38.1%, Released Date: April 13, 2007 #18131

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAZG01000001
239.9 KB
250 CDS

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whole genome shotgun sequence
NZ_AAZG01000002
219.0 KB
212 CDS

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whole genome shotgun sequence
NZ_AAZG01000003
198.9 KB
221 CDS

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whole genome shotgun sequence
NZ_AAZG01000004
144.0 KB
156 CDS

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whole genome shotgun sequence
NZ_AAZG01000005
120.8 KB
142 CDS

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whole genome shotgun sequence
NZ_AAZG01000006
104.4 KB
114 CDS

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whole genome shotgun sequence
NZ_AAZG01000007
77.1 KB
71 CDS

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whole genome shotgun sequence
NZ_AAZG01000008
69.1 KB
69 CDS

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whole genome shotgun sequence
NZ_AAZG01000009
65.9 KB
64 CDS

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whole genome shotgun sequence
NZ_AAZG01000010
61.9 KB
72 CDS

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whole genome shotgun sequence
NZ_AAZG01000011
60.8 KB
58 CDS

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whole genome shotgun sequence
NZ_AAZG01000012
55.7 KB
49 CDS

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whole genome shotgun sequence
NZ_AAZG01000013
51.4 KB
51 CDS

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whole genome shotgun sequence
NZ_AAZG01000014
44.3 KB
48 CDS

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whole genome shotgun sequence
NZ_AAZG01000015
39.6 KB
39 CDS

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whole genome shotgun sequence
NZ_AAZG01000016
33.6 KB
37 CDS

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whole genome shotgun sequence
NZ_AAZG01000017
30.5 KB
33 CDS

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whole genome shotgun sequence
NZ_AAZG01000018
27.3 KB
24 CDS

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whole genome shotgun sequence
NZ_AAZG01000019
26.2 KB
40 CDS

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whole genome shotgun sequence
NZ_AAZG01000020
23.1 KB
33 CDS

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whole genome shotgun sequence
NZ_AAZG01000021
21.2 KB
31 CDS

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whole genome shotgun sequence
NZ_AAZG01000022
15.3 KB
12 CDS

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whole genome shotgun sequence
NZ_AAZG01000023
13.9 KB
15 CDS

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whole genome shotgun sequence
NZ_AAZG01000024
11.4 KB
23 CDS

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whole genome shotgun sequence
NZ_AAZG01000025
10.6 KB
23 CDS

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whole genome shotgun sequence
NZ_AAZG01000026
9.8 KB
11 CDS

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whole genome shotgun sequence
NZ_AAZG01000027
9.6 KB
13 CDS

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whole genome shotgun sequence
NZ_AAZG01000028
8.6 KB
9 CDS

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whole genome shotgun sequence
NZ_AAZG01000029
5.7 KB
11 CDS

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whole genome shotgun sequence
NZ_AAZG01000030
5.3 KB
8 CDS

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whole genome shotgun sequence
NZ_AAZG01000031
4.8 KB
13 CDS

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whole genome shotgun sequence
NZ_AAZG01000032
4.3 KB
8 CDS

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whole genome shotgun sequence
NZ_AAZG01000033
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAZG01000034
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAZG01000035
3.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAZG01000036
2.8 KB
6 CDS

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whole genome shotgun sequence
NZ_AAZG01000037
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAZG01000038
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAZG01000039
997 bytes
5 CDS

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whole genome shotgun sequence
NZ_AAZG01000040
833 bytes
0 CDS

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Taxonomy

External Links

Haemophilus influenzae PittAA

Search Genome

Sequences

PubMed Search for Haemophilus influenzae PittAA

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