Haemophilus influenzae PittII

Allegheny-Singer Research Institute (ASRI)

Genome Size: 1.92 megabases, GC Content: 38.0%, Released Date: April 13, 2007 #18133

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAZI01000001
376.0 KB
397 CDS

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whole genome shotgun sequence
NZ_AAZI01000002
312.5 KB
335 CDS

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whole genome shotgun sequence
NZ_AAZI01000003
263.3 KB
286 CDS

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whole genome shotgun sequence
NZ_AAZI01000004
132.6 KB
122 CDS

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whole genome shotgun sequence
NZ_AAZI01000005
127.0 KB
135 CDS

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whole genome shotgun sequence
NZ_AAZI01000006
121.0 KB
119 CDS

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whole genome shotgun sequence
NZ_AAZI01000007
116.4 KB
135 CDS

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whole genome shotgun sequence
NZ_AAZI01000008
99.0 KB
97 CDS

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whole genome shotgun sequence
NZ_AAZI01000009
89.9 KB
90 CDS

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whole genome shotgun sequence
NZ_AAZI01000010
63.0 KB
58 CDS

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whole genome shotgun sequence
NZ_AAZI01000011
58.5 KB
67 CDS

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whole genome shotgun sequence
NZ_AAZI01000012
43.2 KB
56 CDS

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whole genome shotgun sequence
NZ_AAZI01000013
25.5 KB
21 CDS

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whole genome shotgun sequence
NZ_AAZI01000014
23.6 KB
31 CDS

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whole genome shotgun sequence
NZ_AAZI01000015
17.4 KB
16 CDS

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whole genome shotgun sequence
NZ_AAZI01000016
10.9 KB
11 CDS

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whole genome shotgun sequence
NZ_AAZI01000017
6.1 KB
12 CDS

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whole genome shotgun sequence
NZ_AAZI01000018
5.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AAZI01000019
4.7 KB
10 CDS

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whole genome shotgun sequence
NZ_AAZI01000020
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_AAZI01000021
3.6 KB
9 CDS

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whole genome shotgun sequence
NZ_AAZI01000022
2.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAZI01000023
706 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAZI01000024
688 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAZI01000025
671 bytes
4 CDS

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Taxonomy

External Links

Haemophilus influenzae PittII

Search Genome

Sequences

PubMed Search for Haemophilus influenzae PittII

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