Haemophilus influenzae R3021

Allegheny-Singer Research Institute (ASRI)

Genome Size: 1.87561 megabases, GC Content: 38.0%, Released Date: April 13, 2007 #20394

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg40, whole genome shotgun sequence
NZ_AAZE01000001
307.3 KB
338 CDS

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ctg38, whole genome shotgun sequence
NZ_AAZE01000002
170.5 KB
193 CDS

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ctg22, whole genome shotgun sequence
NZ_AAZE01000003
124.0 KB
146 CDS

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ctg13, whole genome shotgun sequence
NZ_AAZE01000004
104.2 KB
109 CDS

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ctg46, whole genome shotgun sequence
NZ_AAZE01000005
99.2 KB
124 CDS

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ctg16, whole genome shotgun sequence
NZ_AAZE01000006
81.2 KB
89 CDS

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ctg20, whole genome shotgun sequence
NZ_AAZE01000007
77.9 KB
95 CDS

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ctg26, whole genome shotgun sequence
NZ_AAZE01000008
77.2 KB
80 CDS

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ctg1, whole genome shotgun sequence
NZ_AAZE01000009
68.6 KB
97 CDS

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ctg21, whole genome shotgun sequence
NZ_AAZE01000010
60.9 KB
69 CDS

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ctg11, whole genome shotgun sequence
NZ_AAZE01000011
60.5 KB
67 CDS

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ctg18, whole genome shotgun sequence
NZ_AAZE01000012
57.4 KB
54 CDS

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ctg34, whole genome shotgun sequence
NZ_AAZE01000013
50.9 KB
62 CDS

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ctg15, whole genome shotgun sequence
NZ_AAZE01000014
42.2 KB
40 CDS

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ctg12, whole genome shotgun sequence
NZ_AAZE01000015
39.4 KB
40 CDS

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ctg45, whole genome shotgun sequence
NZ_AAZE01000016
33.6 KB
30 CDS

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ctg14, whole genome shotgun sequence
NZ_AAZE01000017
30.5 KB
34 CDS

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ctg41, whole genome shotgun sequence
NZ_AAZE01000018
28.7 KB
28 CDS

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ctg35, whole genome shotgun sequence
NZ_AAZE01000019
28.6 KB
23 CDS

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ctg23, whole genome shotgun sequence
NZ_AAZE01000020
28.4 KB
28 CDS

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ctg9, whole genome shotgun sequence
NZ_AAZE01000021
26.9 KB
45 CDS

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ctg33, whole genome shotgun sequence
NZ_AAZE01000022
25.5 KB
32 CDS

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ctg19, whole genome shotgun sequence
NZ_AAZE01000023
24.4 KB
34 CDS

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ctg36, whole genome shotgun sequence
NZ_AAZE01000024
23.8 KB
32 CDS

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ctg44, whole genome shotgun sequence
NZ_AAZE01000025
23.3 KB
26 CDS

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ctg32, whole genome shotgun sequence
NZ_AAZE01000026
22.5 KB
21 CDS

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ctg43, whole genome shotgun sequence
NZ_AAZE01000027
16.3 KB
17 CDS

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ctg7, whole genome shotgun sequence
NZ_AAZE01000028
15.8 KB
34 CDS

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ctg39, whole genome shotgun sequence
NZ_AAZE01000029
13.8 KB
15 CDS

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ctg29, whole genome shotgun sequence
NZ_AAZE01000030
11.5 KB
18 CDS

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ctg10, whole genome shotgun sequence
NZ_AAZE01000031
10.4 KB
8 CDS

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ctg28, whole genome shotgun sequence
NZ_AAZE01000032
8.9 KB
13 CDS

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ctg27, whole genome shotgun sequence
NZ_AAZE01000033
6.5 KB
7 CDS

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ctg8, whole genome shotgun sequence
NZ_AAZE01000034
4.7 KB
5 CDS

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ctg6, whole genome shotgun sequence
NZ_AAZE01000035
4.4 KB
6 CDS

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ctg3, whole genome shotgun sequence
NZ_AAZE01000036
4.0 KB
6 CDS

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ctg2, whole genome shotgun sequence
NZ_AAZE01000037
3.8 KB
9 CDS

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ctg5, whole genome shotgun sequence
NZ_AAZE01000038
3.1 KB
6 CDS

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ctg4, whole genome shotgun sequence
NZ_AAZE01000039
2.8 KB
5 CDS

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ctg42, whole genome shotgun sequence
NZ_AAZE01000040
1.9 KB
3 CDS

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ctg31, whole genome shotgun sequence
NZ_AAZE01000041
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAZE01000042
1.1 KB
0 CDS

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ctg37, whole genome shotgun sequence
NZ_AAZE01000043
1.1 KB
0 CDS

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ctg30, whole genome shotgun sequence
NZ_AAZE01000044
1.0 KB
2 CDS

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ctg25, whole genome shotgun sequence
NZ_AAZE01000045
1012 bytes
5 CDS

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ctg17, whole genome shotgun sequence
NZ_AAZE01000046
592 bytes
1 CDS

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References

Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
Hogg,J.S., Hu,F.Z., Janto,B., Boissy,R., Hayes,J., Keefe,R., Post,J.C. and Ehrlich,G.D. Genome Biol. 8 (6), R103 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Haemophilus influenzae R3021

Search Genome

Sequences

References

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