Haemophilus influenzae Rd KW20

TIGR

Genome Size: 1.8 megabases, GC Content: 38.1%, Released Date: July 28, 1995 #17056

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Two-dimensional map of the proteome of Haemophilus influenzae
  Langen,H., Takacs,B., Evers,S., Berndt,P., Lahm,H.W., Wipf,B., Gray,C. and Fountoulakis,M. Electrophoresis 21 (2), 411-429 (2000)
  PubMed, PubGet, HubMed
• Reference map of the low molecular mass proteins of Haemophilus influenzae
  Fountoulakis,M., Juranville,J.F., Roder,D., Evers,S., Berndt,P. and Langen,H. Electrophoresis 19 (10), 1819-1827 (1998)
  PubMed, PubGet, HubMed
• Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
  Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S., Borodovsky,M., Rudd,K.E. and Koonin,E.V. Curr. Biol. 6 (3), 279-291 (1996)
  PubMed, PubGet, HubMed
• Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome
  Smith,H.O., Tomb,J.F., Dougherty,B.A., Fleischmann,R.D. and Venter,J.C. Science 269 (5223), 538-540 (1995)
  PubMed, PubGet, HubMed
• Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
  Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G.G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. Science 269 (5223), 496-512 (1995)
  PubMed, PubGet, HubMed

Related Genomes

• Haemophilus influenzae 86-028NP
• Haemophilus influenzae PittEE
• Haemophilus influenzae PittGG
• Haemophilus influenzae 22.1-21
• Haemophilus influenzae 3655
• Haemophilus influenzae 6P18H1
• Haemophilus influenzae 7P49H1
• Haemophilus influenzae PittAA
• Haemophilus influenzae PittHH
• Haemophilus influenzae PittII
• Haemophilus influenzae 10810
• Haemophilus influenzae R2846
• Haemophilus influenzae R2866
• Haemophilus influenzae HK1212
• Haemophilus influenzae NT127
• Haemophilus influenzae R3021
• Haemophilus influenzae R3021
• Haemophilus influenzae RdAW