Haloarcula marismortui ATCC 43049

Institute for Systems Biology , Center of Marine Biotechnology

Genome Size: 4.27 megabases, GC Content: 61.1%, Released Date: Nov. 3, 2004 #17062

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome I
NC_006396
3.0 MB
3131 CDS

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chromosome II
NC_006397
281.3 KB
281 CDS

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plasmid pNG100
NC_006389
32.5 KB
36 CDS

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plasmid pNG200
NC_006390
32.7 KB
42 CDS

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plasmid pNG300
NC_006391
38.6 KB
40 CDS

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plasmid pNG400
NC_006392
48.9 KB
51 CDS

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plasmid pNG500
NC_006393
129.6 KB
131 CDS

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plasmid pNG600
NC_006394
151.7 KB
166 CDS

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plasmid pNG700
NC_006395
400.9 KB
362 CDS

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References

Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea
Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. Genome Res. 14 (11), 2221-2234 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Haloarcula marismortui ATCC 43049

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Sequences

References

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