Helicobacter acinonychis str. Sheeba

Penn State Univ.

Genome Size: 1.6 megabases, GC Content: 38.2%, Released Date: June 28, 2006 #17073

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008229
1.5 MB
1612 CDS

Table view
Circular View
Artemis Viewer

plasmid pHac1
NC_008230
3.6 KB
6 CDS

Table view
Circular View
Artemis Viewer

References

Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines
Eppinger,M., Baar,C., Linz,B., Raddatz,G., Lanz,C., Keller,H., Morelli,G., Gressmann,H., Achtman,M. and Schuster,S.C. PLoS Genet. 2 (7), E120 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter acinonychis str. Sheeba

Search Genome

Sequences

References

Related Genomes