Helicobacter canadensis MIT 98-5491

Broad Institute

GC Content: 33.7%, Released Date: Aug. 26, 2008 #18139

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABQS01000001
24.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ABQS01000002
22.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ABQS01000003
14.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000004
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000005
36.1 KB
35 CDS

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whole genome shotgun sequence
NZ_ABQS01000006
3.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000007
19.4 KB
22 CDS

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whole genome shotgun sequence
NZ_ABQS01000008
29.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ABQS01000009
23.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ABQS01000010
70.9 KB
67 CDS

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whole genome shotgun sequence
NZ_ABQS01000011
37.1 KB
55 CDS

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whole genome shotgun sequence
NZ_ABQS01000012
9.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000013
5.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000014
43.4 KB
42 CDS

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whole genome shotgun sequence
NZ_ABQS01000015
5.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQS01000016
12.8 KB
16 CDS

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whole genome shotgun sequence
NZ_ABQS01000017
12.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABQS01000018
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQS01000019
6.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQS01000020
33.8 KB
34 CDS

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whole genome shotgun sequence
NZ_ABQS01000021
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000022
19.0 KB
19 CDS

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whole genome shotgun sequence
NZ_ABQS01000023
11.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000024
28.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ABQS01000025
67.3 KB
79 CDS

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whole genome shotgun sequence
NZ_ABQS01000026
14.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000027
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQS01000028
53.9 KB
44 CDS

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whole genome shotgun sequence
NZ_ABQS01000029
23.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ABQS01000030
4.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000031
8.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000032
5.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000033
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000034
44.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ABQS01000035
7.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQS01000036
49.8 KB
46 CDS

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whole genome shotgun sequence
NZ_ABQS01000037
26.2 KB
29 CDS

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whole genome shotgun sequence
NZ_ABQS01000038
11.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000039
12.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ABQS01000040
17.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000041
21.8 KB
23 CDS

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whole genome shotgun sequence
NZ_ABQS01000042
1.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQS01000043
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000044
4.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000045
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000046
9.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000047
31.3 KB
31 CDS

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whole genome shotgun sequence
NZ_ABQS01000048
13.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABQS01000049
21.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000050
25.5 KB
25 CDS

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whole genome shotgun sequence
NZ_ABQS01000051
11.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABQS01000052
6.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000053
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQS01000054
17.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ABQS01000055
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000056
12.8 KB
13 CDS

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whole genome shotgun sequence
NZ_ABQS01000057
13.2 KB
15 CDS

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whole genome shotgun sequence
NZ_ABQS01000058
16.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABQS01000059
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQS01000060
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000061
6.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000062
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000063
8.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ABQS01000064
17.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ABQS01000065
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQS01000066
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000067
29.8 KB
39 CDS

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whole genome shotgun sequence
NZ_ABQS01000068
15.8 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000069
14.4 KB
13 CDS

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whole genome shotgun sequence
NZ_ABQS01000070
14.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABQS01000071
10.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABQS01000072
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000073
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQS01000074
16.2 KB
21 CDS

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whole genome shotgun sequence
NZ_ABQS01000075
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000076
28.0 KB
25 CDS

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whole genome shotgun sequence
NZ_ABQS01000077
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000078
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000079
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000080
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQS01000081
36.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ABQS01000082
6.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000083
9.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000084
8.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000085
16.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ABQS01000086
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000087
12.5 KB
16 CDS

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whole genome shotgun sequence
NZ_ABQS01000088
22.6 KB
22 CDS

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whole genome shotgun sequence
NZ_ABQS01000089
9.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQS01000090
8.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQS01000091
15.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000092
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000093
4.6 KB
7 CDS

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whole genome shotgun sequence
NZ_ABQS01000094
27.7 KB
30 CDS

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whole genome shotgun sequence
NZ_ABQS01000095
20.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABQS01000096
7.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQS01000097
6.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQS01000098
5.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000099
9.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQS01000100
9.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQS01000101
3.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQS01000102
5.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQS01000103
10.3 KB
12 CDS

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whole genome shotgun sequence
NZ_ABQS01000104
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000105
12.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ABQS01000106
5.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABQS01000107
14.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQS01000108
5.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ABQS01000109
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000110
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000111
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000112
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000113
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQS01000114
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000115
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQS01000116
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQS01000117
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000118
907 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000119
903 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQS01000120
849 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000121
832 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000122
775 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000123
734 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000124
573 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQS01000125
568 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABQS01000126
1.6 KB
2 CDS

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Taxonomy

External Links

Helicobacter canadensis MIT 98-5491

Search Genome

Sequences

PubMed Search for Helicobacter canadensis MIT 98-5491

Related Genomes