Helicobacter canadensis MIT 98-5491

University of Birmingham

Genome Size: 3.223 megabases, GC Content: 33.7%, Released Date: July 7, 2009 #20397

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

hc1, whole genome shotgun sequence
ACSF01000001
65.3 KB
0 CDS

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hc2, whole genome shotgun sequence
ACSF01000002
1.1 MB
0 CDS

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hc3, whole genome shotgun sequence
ACSF01000003
195.3 KB
0 CDS

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hc4, whole genome shotgun sequence
ACSF01000004
150.3 KB
0 CDS

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chromosome, whole genome shotgun sequence
NZ_CM000776
1.5 MB
1535 CDS

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References

Genome sequence of the emerging pathogen Helicobacter canadensis
Loman,N.J., Snyder,L.A., Linton,J.D., Langdon,R., Lawson,A.J., Weinstock,G.M., Wren,B.W. and Pallen,M.J. J. Bacteriol. 191 (17), 5566-5567 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter canadensis MIT 98-5491

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Sequences

References

Related Genomes