Helicobacter cinaedi CCUG 18818

Broad Institute

GC Content: 38.5%, Released Date: Aug. 26, 2008 #18140

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABQT01000001
48.8 KB
89 CDS

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whole genome shotgun sequence
NZ_ABQT01000002
16.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ABQT01000003
20.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ABQT01000004
24.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABQT01000005
64.0 KB
70 CDS

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whole genome shotgun sequence
NZ_ABQT01000006
119.8 KB
146 CDS

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whole genome shotgun sequence
NZ_ABQT01000007
42.8 KB
49 CDS

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whole genome shotgun sequence
NZ_ABQT01000008
28.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ABQT01000009
51.2 KB
58 CDS

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whole genome shotgun sequence
NZ_ABQT01000010
6.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQT01000011
6.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQT01000012
57.4 KB
61 CDS

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whole genome shotgun sequence
NZ_ABQT01000013
301.8 KB
311 CDS

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whole genome shotgun sequence
NZ_ABQT01000014
27.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ABQT01000015
125.9 KB
129 CDS

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whole genome shotgun sequence
NZ_ABQT01000016
24.9 KB
24 CDS

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whole genome shotgun sequence
NZ_ABQT01000017
15.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQT01000018
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000019
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000020
66.1 KB
72 CDS

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whole genome shotgun sequence
NZ_ABQT01000021
5.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQT01000022
54.1 KB
56 CDS

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whole genome shotgun sequence
NZ_ABQT01000023
7.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQT01000024
44.1 KB
47 CDS

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whole genome shotgun sequence
NZ_ABQT01000025
251.9 KB
249 CDS

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whole genome shotgun sequence
NZ_ABQT01000026
80.7 KB
87 CDS

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whole genome shotgun sequence
NZ_ABQT01000027
108.8 KB
115 CDS

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whole genome shotgun sequence
NZ_ABQT01000028
123.0 KB
124 CDS

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whole genome shotgun sequence
NZ_ABQT01000029
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABQT01000030
12.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ABQT01000031
119.6 KB
144 CDS

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whole genome shotgun sequence
NZ_ABQT01000032
31.7 KB
44 CDS

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whole genome shotgun sequence
NZ_ABQT01000033
14.8 KB
18 CDS

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whole genome shotgun sequence
NZ_ABQT01000034
64.7 KB
76 CDS

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whole genome shotgun sequence
NZ_ABQT01000035
567 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000036
17.4 KB
26 CDS

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whole genome shotgun sequence
NZ_ABQT01000037
1.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQT01000038
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQT01000039
5.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000040
5.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ABQT01000041
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQT01000042
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000043
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000044
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000045
2.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ABQT01000046
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000047
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000048
9.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABQT01000049
9.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABQT01000050
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000051
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000052
4.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABQT01000053
7.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ABQT01000054
6.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000055
3.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000056
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000057
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQT01000058
1.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQT01000059
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000060
2.9 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000061
4.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ABQT01000062
2.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABQT01000063
606 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000064
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000065
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000066
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABQT01000067
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000068
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000069
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000070
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000071
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000072
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000073
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000074
898 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000075
885 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000076
878 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000077
873 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000078
852 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000079
839 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000080
807 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000081
798 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000082
690 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABQT01000083
679 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000084
620 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000085
604 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000086
599 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000087
593 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000088
572 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000089
571 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000090
563 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000091
552 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000092
531 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000093
522 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABQT01000094
516 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABQT01000095
504 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQT01000096
520 bytes
1 CDS

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Taxonomy

External Links

Helicobacter cinaedi CCUG 18818

Search Genome

Sequences

PubMed Search for Helicobacter cinaedi CCUG 18818

Related Genomes