Helicobacter pylori 26695

TIGR

Genome Size: 1.7 megabases, GC Content: 38.9%, Released Date: Aug. 7, 1997 #17075

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_000915
1.6 MB
1573 CDS

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Circular View
Artemis Viewer

References

The complete genome sequence of the gastric pathogen Helicobacter pylori
Tomb,J.-F., White,O., Kerlavage,A.R., Clayton,R.A., Sutton,G.G., Fleischmann,R.D., Ketchum,K.A., Klenk,H.P., Gill,S., Dougherty,B.A., Nelson,K., Quackenbush,J., Zhou,L., Kirkness,E.F., Peterson,S., Loftus,B., Richardson,D., Dodson,R., Khalak,H.G., Glodek,A., McKenney,K., Fitzegerald,L.M., Lee,N., Adams,M.D., Hickey,E.K., Berg,D.E., Gocayne,J.D., Utterback,T.R., Peterson,J.D., Kelley,J.M., Karp,P.D., Smith,H.O., Fraser,C.M. and Venter,J.C. Nature 388 (6642), 539-547 (1997)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter pylori 26695

Search Genome

Sequences

References

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