Helicobacter pylori 98-10

Vanderbilt University School of Medicine

GC Content: 38.8%, Released Date: Dec. 9, 2008 #18141

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABSX01000001
127.8 KB
138 CDS

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whole genome shotgun sequence
NZ_ABSX01000002
98.9 KB
94 CDS

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whole genome shotgun sequence
NZ_ABSX01000003
90.2 KB
82 CDS

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whole genome shotgun sequence
NZ_ABSX01000004
75.5 KB
93 CDS

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whole genome shotgun sequence
NZ_ABSX01000005
73.1 KB
60 CDS

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whole genome shotgun sequence
NZ_ABSX01000006
72.7 KB
76 CDS

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whole genome shotgun sequence
NZ_ABSX01000007
68.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABSX01000008
60.6 KB
61 CDS

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whole genome shotgun sequence
NZ_ABSX01000009
58.1 KB
65 CDS

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whole genome shotgun sequence
NZ_ABSX01000010
56.2 KB
56 CDS

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whole genome shotgun sequence
NZ_ABSX01000011
56.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ABSX01000012
51.9 KB
55 CDS

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whole genome shotgun sequence
NZ_ABSX01000013
51.4 KB
57 CDS

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whole genome shotgun sequence
NZ_ABSX01000014
49.4 KB
47 CDS

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whole genome shotgun sequence
NZ_ABSX01000015
48.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ABSX01000016
45.7 KB
47 CDS

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whole genome shotgun sequence
NZ_ABSX01000017
38.5 KB
39 CDS

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whole genome shotgun sequence
NZ_ABSX01000018
36.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABSX01000019
36.4 KB
36 CDS

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whole genome shotgun sequence
NZ_ABSX01000020
29.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ABSX01000021
29.6 KB
30 CDS

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whole genome shotgun sequence
NZ_ABSX01000022
28.2 KB
27 CDS

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whole genome shotgun sequence
NZ_ABSX01000023
26.3 KB
31 CDS

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whole genome shotgun sequence
NZ_ABSX01000024
25.8 KB
31 CDS

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whole genome shotgun sequence
NZ_ABSX01000025
22.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ABSX01000026
19.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSX01000027
18.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ABSX01000028
18.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ABSX01000029
17.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ABSX01000030
16.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABSX01000031
15.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABSX01000032
11.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ABSX01000033
10.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ABSX01000034
10.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ABSX01000035
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSX01000036
4.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABSX01000037
4.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABSX01000038
4.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSX01000039
3.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSX01000040
2.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSX01000041
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSX01000042
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000043
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000044
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000045
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000046
974 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000047
969 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000048
801 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSX01000049
758 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000050
743 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSX01000051
678 bytes
1 CDS

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Taxonomy

External Links

Helicobacter pylori 98-10

Search Genome

Sequences

PubMed Search for Helicobacter pylori 98-10

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