Helicobacter pylori B128

Vanderbilt University School of Medicine

GC Content: 38.8%, Released Date: Dec. 9, 2008 #18142

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABSY01000001
221.3 KB
244 CDS

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whole genome shotgun sequence
NZ_ABSY01000002
93.5 KB
104 CDS

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whole genome shotgun sequence
NZ_ABSY01000003
83.8 KB
88 CDS

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whole genome shotgun sequence
NZ_ABSY01000004
80.2 KB
91 CDS

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whole genome shotgun sequence
NZ_ABSY01000005
71.2 KB
66 CDS

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whole genome shotgun sequence
NZ_ABSY01000006
69.1 KB
93 CDS

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whole genome shotgun sequence
NZ_ABSY01000007
56.1 KB
63 CDS

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whole genome shotgun sequence
NZ_ABSY01000008
54.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ABSY01000009
46.3 KB
49 CDS

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whole genome shotgun sequence
NZ_ABSY01000010
41.9 KB
49 CDS

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whole genome shotgun sequence
NZ_ABSY01000011
37.5 KB
47 CDS

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whole genome shotgun sequence
NZ_ABSY01000012
36.3 KB
38 CDS

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whole genome shotgun sequence
NZ_ABSY01000013
36.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ABSY01000014
34.7 KB
30 CDS

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whole genome shotgun sequence
NZ_ABSY01000015
33.5 KB
35 CDS

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whole genome shotgun sequence
NZ_ABSY01000016
33.1 KB
36 CDS

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whole genome shotgun sequence
NZ_ABSY01000017
29.2 KB
31 CDS

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whole genome shotgun sequence
NZ_ABSY01000018
28.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ABSY01000019
26.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ABSY01000020
25.8 KB
30 CDS

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whole genome shotgun sequence
NZ_ABSY01000021
25.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ABSY01000022
24.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ABSY01000023
22.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSY01000024
22.3 KB
24 CDS

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whole genome shotgun sequence
NZ_ABSY01000025
21.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ABSY01000026
20.9 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSY01000027
20.4 KB
21 CDS

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whole genome shotgun sequence
NZ_ABSY01000028
18.8 KB
19 CDS

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whole genome shotgun sequence
NZ_ABSY01000029
18.2 KB
24 CDS

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whole genome shotgun sequence
NZ_ABSY01000030
18.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSY01000031
17.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSY01000032
17.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ABSY01000033
16.8 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSY01000034
13.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABSY01000035
13.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ABSY01000036
12.9 KB
12 CDS

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whole genome shotgun sequence
NZ_ABSY01000037
12.5 KB
13 CDS

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whole genome shotgun sequence
NZ_ABSY01000038
12.5 KB
12 CDS

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whole genome shotgun sequence
NZ_ABSY01000039
11.8 KB
13 CDS

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whole genome shotgun sequence
NZ_ABSY01000040
10.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABSY01000041
9.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABSY01000042
8.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABSY01000043
7.9 KB
12 CDS

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whole genome shotgun sequence
NZ_ABSY01000044
7.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABSY01000045
6.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABSY01000046
6.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABSY01000047
6.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSY01000048
5.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSY01000049
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000050
4.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSY01000051
4.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSY01000052
4.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABSY01000053
4.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ABSY01000054
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000055
4.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSY01000056
3.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000057
3.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000058
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000059
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSY01000060
2.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000061
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSY01000062
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSY01000063
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000064
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSY01000065
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000066
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000067
911 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000068
887 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000069
843 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000070
798 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000071
787 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000072
749 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSY01000073
649 bytes
1 CDS

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Taxonomy

External Links

Helicobacter pylori B128

Search Genome

Sequences

PubMed Search for Helicobacter pylori B128

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