Helicobacter pylori B8

Bielefeld Univ

Genome Size: 1.706 megabases, Released Date: June 15, 2010 #19914

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
FN598874
1.6 MB
1711 CDS

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Helicobacter pylori HPB8p plasmid, strain B8
FN665651
5.9 KB
9 CDS

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References

Sequencing, annotation and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Farnbacher,M., Jahns,T., Willrodt,D., Daniel,R., Haas,R., Goesmann,A., Kurtz,S. and Rieder,G. BMC Genomics 11 (1), 335 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter pylori B8

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Sequences

References

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