Helicobacter pylori G27

University of Oregon , Washington University in St. Louis

Genome Size: 1.71 megabases, GC Content: 38.9%, Released Date: Oct. 3, 2008 #17077

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_011333
1.6 MB
1493 CDS

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plasmid pHPG27
NC_011334
9.8 KB
11 CDS

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References

The complete genome sequence of Helicobacter pylori strain G27
Baltrus,D.A., Amieva,M.R., Covacci,A., Lowe,T.M., Merrell,D.S., Ottemann,K.M., Stein,M., Salama,N.R. and Guillemin,K. J. Bacteriol. 191 (1), 447-448 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter pylori G27

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Sequences

References

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