Helicobacter pylori HPAG1

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 1.61 megabases, GC Content: 39.1%, Released Date: June 6, 2006 #17078

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008086
1.5 MB
1532 CDS

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Circular View
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plasmid pHPAG1
NC_008087
9.2 KB
8 CDS

Table view
Circular View
Artemis Viewer

References

The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression
Oh,J.D., Kling-Backhed,H., Giannakis,M., Xu,J., Fulton,R.S., Fulton,L.A., Cordum,H.S., Wang,C., Elliott,G., Edwards,J., Mardis,E.R., Engstrand,L.G. and Gordon,J.I. Proc. Natl. Acad. Sci. U.S.A. 103 (26), 9999-10004 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Helicobacter pylori HPAG1

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Sequences

References

Related Genomes