Janibacter sp. HTCC2649

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 68.4%, Released Date: Jan. 5, 2006 #18150

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAMN01000001
1.3 MB
1359 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000002
1.1 MB
1100 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000003
750.6 KB
747 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000004
635.0 KB
615 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000005
106.0 KB
114 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000006
90.8 KB
88 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000007
36.5 KB
41 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000008
17.0 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000009
7.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000010
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000011
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000012
1.1 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000013
1.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAMN01000014
1.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Janibacter sp. HTCC2649

Search Genome

Sequences

PubMed Search for Janibacter sp. HTCC2649

Related Genomes