Ktedonobacter racemifer DSM 44963

DOE Joint Genome Institute

Genome Size: 14.0 megabases, GC Content: 53.9%, Released Date: June 4, 2010 #20401

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

Krac_Contig206, whole genome shotgun sequence
NZ_ADVG01000001
3.7 MB
0 CDS

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Krac_Contig205, whole genome shotgun sequence
NZ_ADVG01000002
2.8 MB
0 CDS

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Krac_Contig204, whole genome shotgun sequence
NZ_ADVG01000003
2.6 MB
0 CDS

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Krac_Contig203, whole genome shotgun sequence
NZ_ADVG01000004
2.6 MB
0 CDS

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Krac_Contig202, whole genome shotgun sequence
NZ_ADVG01000005
1.2 MB
0 CDS

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Krac_Contig201, whole genome shotgun sequence
NZ_ADVG01000006
63.2 KB
70 CDS

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Krac_Contig199, whole genome shotgun sequence
NZ_ADVG01000007
32.5 KB
32 CDS

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Krac_Contig200, whole genome shotgun sequence
NZ_ADVG01000008
17.0 KB
21 CDS

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Krac_Contig198, whole genome shotgun sequence
NZ_ADVG01000009
8.8 KB
5 CDS

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Krac_Contig197, whole genome shotgun sequence
NZ_ADVG01000010
1.5 KB
1 CDS

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Taxonomy

External Links

Ktedonobacter racemifer DSM 44963

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Sequences

PubMed Search for Ktedonobacter racemifer DSM 44963

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