Lactobacillus acidophilus NCFM

Cal Poly. San Luis Obispo , Department of Food Science, North Carolina State University

Genome Size: 2.0 megabases, GC Content: 34.7%, Released Date: Jan. 31, 2005 #17103

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_006814
1.9 MB
1862 CDS

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References

Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM
Altermann,E., Russell,W.M., Azcarate-Peril,M.A., Barrangou,R., Buck,B.L., McAuliffe,O., Souther,N., Dobson,A., Duong,T., Callanan,M., Lick,S., Hamrick,A., Cano,R. and Klaenhammer,T.R. Proc. Natl. Acad. Sci. U.S.A. 102 (11), 3906-3912 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus acidophilus NCFM

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Sequences

References

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