Lactobacillus crispatus ST1

Institute of Biotechnology, University of Helsinki, Finland , DNA Sequencing and Genomics lab, Institute of Biotechnology, University of Helsinki

Genome Size: 2.0 megabases, Released Date: April 22, 2010 #19932

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome, strain ST1
FN692037
1.9 MB
2024 CDS

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References

Genome sequence of Lactobacillus crispatus ST1
Ojala,T., Kuparinen,V., Koskinen,J.P., Alatalo,E., Holm,L., Auvinen,P., Edelman,S., Westerlund-Wikstrom,B., Korhonen,T.K., Paulin,L. and Kankainen,M. J. Bacteriol. 192 (13), 3547-3548 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus crispatus ST1

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Sequences

References

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