Lactobacillus gasseri 224-1

J. Craig Venter Institute

Genome Size: 2.0 megabases, GC Content: 35.0%, Released Date: Dec. 30, 2009 #20418

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADFT01000001
104.6 KB
111 CDS

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whole genome shotgun sequence
NZ_ADFT01000002
271.8 KB
343 CDS

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whole genome shotgun sequence
NZ_ADFT01000003
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFT01000004
309 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADFT01000005
22.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ADFT01000006
239 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000007
353 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000008
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFT01000009
21.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ADFT01000010
220 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFT01000011
418.4 KB
533 CDS

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whole genome shotgun sequence
NZ_ADFT01000012
24.2 KB
30 CDS

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whole genome shotgun sequence
NZ_ADFT01000013
100.5 KB
129 CDS

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whole genome shotgun sequence
NZ_ADFT01000014
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ADFT01000015
343 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000016
75.8 KB
88 CDS

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whole genome shotgun sequence
NZ_ADFT01000017
272 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000018
137.9 KB
155 CDS

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whole genome shotgun sequence
NZ_ADFT01000019
33.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ADFT01000020
435 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000021
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ADFT01000022
254 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000023
15.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFT01000024
48.2 KB
54 CDS

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whole genome shotgun sequence
NZ_ADFT01000025
409 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000026
11.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFT01000027
284 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFT01000028
325 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000029
337 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFT01000030
3.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFT01000031
43.3 KB
46 CDS

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whole genome shotgun sequence
NZ_ADFT01000032
304 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFT01000033
288 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFT01000034
454.3 KB
485 CDS

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whole genome shotgun sequence
NZ_ADFT01000035
155.9 KB
147 CDS

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whole genome shotgun sequence
NZ_ADFT01000036
3.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFT01000037
332 bytes
1 CDS

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Taxonomy

External Links

Lactobacillus gasseri 224-1

Search Genome

Sequences

PubMed Search for Lactobacillus gasseri 224-1

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