Lactobacillus gasseri JV-V03

Baylor College of Medecine

GC Content: 34.6%, Released Date: Feb. 19, 2009 #18162

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACGO01000001
11.3 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000002
82.3 KB
72 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000003
23.9 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000004
104.0 KB
114 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000005
5.3 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000006
571.7 KB
604 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000007
133.9 KB
153 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000008
102.7 KB
112 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000009
51.0 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000010
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000011
27.4 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000012
41.9 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000013
49.2 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000014
174.5 KB
186 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000015
211.4 KB
196 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000016
32.2 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000017
60.7 KB
62 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000018
241 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000019
27.9 KB
29 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000020
2.2 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000021
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000022
6.3 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000023
1.9 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000024
3.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000025
240 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000026
1.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000027
770 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000028
75.6 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000029
15.9 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000030
105.7 KB
95 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000031
332 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000032
251 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000033
250 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000034
381 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000035
8.7 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000036
20.2 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000037
441 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000038
991 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACGO01000039
243 bytes
0 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Lactobacillus gasseri JV-V03

Search Genome

Sequences

PubMed Search for Lactobacillus gasseri JV-V03

Related Genomes