Lactobacillus gasseri MV-22

Broad Institute

GC Content: 35.0%, Released Date: Oct. 14, 2008 #18163

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABWH01000001
1.3 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000002
2.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000003
149.0 KB
141 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000004
45.5 KB
43 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000005
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000006
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000007
131.8 KB
137 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000008
78.0 KB
92 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000009
20.7 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000010
16.9 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000011
2.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000012
1.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000013
69.1 KB
73 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000014
40.8 KB
46 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000015
42.2 KB
46 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000016
2.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000017
45.4 KB
45 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000018
38.6 KB
67 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000019
21.3 KB
42 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000020
26.1 KB
34 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000021
65.9 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000022
9.1 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000023
912 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000024
17.6 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000025
1.4 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000026
16.0 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000027
2.5 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000028
2.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000029
1.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000030
26.7 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000031
22.1 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000032
18.9 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000033
4.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000034
6.4 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000035
12.8 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000036
52.6 KB
51 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000037
8.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000038
2.9 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000039
15.8 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000040
27.1 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000041
994 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000042
11.0 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000043
53.7 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000044
1.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000045
10.2 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000046
39.1 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000047
43.1 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000048
16.9 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000049
26.1 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000050
41.6 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000051
36.8 KB
32 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000052
2.7 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000053
39.3 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000054
36.7 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000055
35.7 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000056
34.3 KB
29 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000057
1.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000058
862 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000059
13.7 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000060
16.0 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000061
30.8 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000062
30.3 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000063
29.3 KB
29 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000064
29.1 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000065
23.6 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000066
23.6 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000067
23.5 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000068
8.8 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000069
10.4 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000070
18.6 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000071
15.5 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000072
12.1 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000073
11.4 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000074
8.1 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000075
8.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000076
7.7 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000077
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000078
3.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000079
2.7 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000080
6.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000081
6.2 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000082
1.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000083
2.8 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000084
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000085
2.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000086
2.6 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000087
795 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000088
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000089
2.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000090
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000091
1.8 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000092
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABWH01000093
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Lactobacillus gasseri MV-22

Search Genome

Sequences

PubMed Search for Lactobacillus gasseri MV-22

Related Genomes