Lactobacillus gasseri SJ-9E-US

Broad Institute

Genome Size: 1.8 megabases, #20419

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

cont1.1, whole genome shotgun sequence
ADDU01000001
179.3 KB
0 CDS

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cont1.2, whole genome shotgun sequence
ADDU01000002
560.8 KB
0 CDS

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cont1.3, whole genome shotgun sequence
ADDU01000003
180.7 KB
0 CDS

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cont1.4, whole genome shotgun sequence
ADDU01000004
11.8 KB
0 CDS

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cont1.5, whole genome shotgun sequence
ADDU01000005
3.7 KB
0 CDS

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cont1.6, whole genome shotgun sequence
ADDU01000006
2.3 KB
0 CDS

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cont1.7, whole genome shotgun sequence
ADDU01000007
399.4 KB
0 CDS

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cont1.8, whole genome shotgun sequence
ADDU01000008
165.9 KB
0 CDS

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cont1.9, whole genome shotgun sequence
ADDU01000009
119.8 KB
0 CDS

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cont1.10, whole genome shotgun sequence
ADDU01000010
63.4 KB
0 CDS

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cont1.11, whole genome shotgun sequence
ADDU01000011
42.3 KB
0 CDS

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cont1.12, whole genome shotgun sequence
ADDU01000012
7.8 KB
0 CDS

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cont1.13, whole genome shotgun sequence
ADDU01000013
1.5 KB
0 CDS

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cont1.14, whole genome shotgun sequence
ADDU01000014
997 bytes
0 CDS

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cont1.15, whole genome shotgun sequence
ADDU01000015
598 bytes
0 CDS

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Taxonomy

External Links

Lactobacillus gasseri SJ-9E-US

Search Genome

Sequences

PubMed Search for Lactobacillus gasseri SJ-9E-US

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