Lactobacillus helveticus DPC 4571

Teagasc, Moorepark Food Research Centre

Genome Size: 2.1 megabases, GC Content: 37.1%, Released Date: Nov. 15, 2007 #17111

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_010080
2.0 MB
1610 CDS

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References

Genome sequence of Lactobacillus helveticus: an organism distinguished by selective gene loss and IS element expansion
Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. J. Bacteriol. (2007) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus helveticus DPC 4571

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Sequences

References

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