Lactobacillus iners AB-1

University of Western Ontario

Genome Size: 1.28746 megabases, GC Content: 32.7%, Released Date: Feb. 2, 2010 #20421

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

NZ_ADHG01000001, whole genome shotgun sequence
NZ_ADHG01000001
734.5 KB
718 CDS

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NZ_ADHG01000002, whole genome shotgun sequence
NZ_ADHG01000002
341.5 KB
321 CDS

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NZ_ADHG01000003, whole genome shotgun sequence
NZ_ADHG01000003
17.7 KB
24 CDS

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NZ_ADHG01000004, whole genome shotgun sequence
NZ_ADHG01000004
96.7 KB
104 CDS

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NZ_ADHG01000005, whole genome shotgun sequence
NZ_ADHG01000005
21.9 KB
5 CDS

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NZ_ADHG01000006, whole genome shotgun sequence
NZ_ADHG01000006
12.7 KB
9 CDS

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NZ_ADHG01000007, whole genome shotgun sequence
NZ_ADHG01000007
32.3 KB
28 CDS

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Taxonomy

External Links

Lactobacillus iners AB-1

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Sequences

PubMed Search for Lactobacillus iners AB-1

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