Lactobacillus iners ATCC 55195

Baylor College of Medicine

Released Date: Dec. 27, 2010 #20422

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEPX01000001
59.6 KB
59 CDS

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contig00002, whole genome shotgun sequence
NZ_AEPX01000002
10.5 KB
4 CDS

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contig00003, whole genome shotgun sequence
NZ_AEPX01000003
3.1 KB
2 CDS

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contig00004, whole genome shotgun sequence
NZ_AEPX01000004
95.9 KB
93 CDS

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contig00005, whole genome shotgun sequence
NZ_AEPX01000005
8.7 KB
7 CDS

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contig00006, whole genome shotgun sequence
NZ_AEPX01000006
90.6 KB
91 CDS

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contig00007, whole genome shotgun sequence
NZ_AEPX01000007
141.2 KB
145 CDS

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contig00008, whole genome shotgun sequence
NZ_AEPX01000008
85.0 KB
87 CDS

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contig00009, whole genome shotgun sequence
NZ_AEPX01000009
260.7 KB
240 CDS

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contig00010, whole genome shotgun sequence
NZ_AEPX01000010
228 bytes
1 CDS

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contig00011, whole genome shotgun sequence
NZ_AEPX01000011
7.7 KB
1 CDS

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contig00012, whole genome shotgun sequence
NZ_AEPX01000012
11.3 KB
3 CDS

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contig00013, whole genome shotgun sequence
NZ_AEPX01000013
407.2 KB
408 CDS

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contig00014, whole genome shotgun sequence
NZ_AEPX01000014
3.1 KB
0 CDS

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contig00015, whole genome shotgun sequence
NZ_AEPX01000015
1.9 KB
0 CDS

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contig00016, whole genome shotgun sequence
NZ_AEPX01000016
1.4 KB
0 CDS

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contig00017, whole genome shotgun sequence
NZ_AEPX01000017
1.3 KB
1 CDS

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contig00018, whole genome shotgun sequence
NZ_AEPX01000018
661 bytes
1 CDS

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contig00019, whole genome shotgun sequence
NZ_AEPX01000019
659 bytes
1 CDS

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Taxonomy

External Links

Lactobacillus iners ATCC 55195

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Sequences

PubMed Search for Lactobacillus iners ATCC 55195

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