Lactobacillus iners DSM 13335

BCM

GC Content: 32.5%, Released Date: April 27, 2009 #18166

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACLN01000001
654 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000002
690 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000003
240.7 KB
228 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000004
450.7 KB
462 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000005
18.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000006
2.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000007
90.5 KB
93 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000008
70.3 KB
64 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000009
3.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000010
40.3 KB
47 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000011
1.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000012
56.8 KB
53 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000013
29.3 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000014
12.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000015
96.7 KB
104 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000016
14.2 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000017
3.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000018
1.9 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000019
99.9 KB
91 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000020
3.7 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000021
1.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACLN01000022
1.5 KB
0 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Lactobacillus iners DSM 13335

Search Genome

Sequences

PubMed Search for Lactobacillus iners DSM 13335

Related Genomes