Lactobacillus iners LactinV 11V1-d

J. Craig Venter Institute

Genome Size: 1.3 megabases, Released Date: Oct. 5, 2010 #20430

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00015, whole genome shotgun sequence
NZ_AEHN01000001
27.9 KB
31 CDS

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contig00028, whole genome shotgun sequence
NZ_AEHN01000002
5.7 KB
2 CDS

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contig00008, whole genome shotgun sequence
NZ_AEHN01000003
224.4 KB
234 CDS

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contig00058, whole genome shotgun sequence
NZ_AEHN01000004
10.1 KB
2 CDS

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contig00023, whole genome shotgun sequence
NZ_AEHN01000005
94.4 KB
102 CDS

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contig00003, whole genome shotgun sequence
NZ_AEHN01000006
46.3 KB
51 CDS

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contig00046, whole genome shotgun sequence
NZ_AEHN01000007
71.3 KB
72 CDS

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contig00001, whole genome shotgun sequence
NZ_AEHN01000008
59.6 KB
62 CDS

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contig00024, whole genome shotgun sequence
NZ_AEHN01000009
1.8 KB
0 CDS

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contig00047, whole genome shotgun sequence
NZ_AEHN01000010
76.0 KB
84 CDS

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contig00022, whole genome shotgun sequence
NZ_AEHN01000011
3.1 KB
0 CDS

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contig00019, whole genome shotgun sequence
NZ_AEHN01000012
3.8 KB
2 CDS

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contig00068, whole genome shotgun sequence
NZ_AEHN01000013
573 bytes
1 CDS

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contig00056, whole genome shotgun sequence
NZ_AEHN01000014
85.8 KB
91 CDS

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contig00007, whole genome shotgun sequence
NZ_AEHN01000015
82.0 KB
82 CDS

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contig00004, whole genome shotgun sequence
NZ_AEHN01000016
58.7 KB
55 CDS

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contig00011, whole genome shotgun sequence
NZ_AEHN01000017
30.7 KB
36 CDS

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contig00018, whole genome shotgun sequence
NZ_AEHN01000018
51.1 KB
45 CDS

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contig00027, whole genome shotgun sequence
NZ_AEHN01000019
103.8 KB
104 CDS

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contig00020, whole genome shotgun sequence
NZ_AEHN01000020
9.0 KB
9 CDS

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contig00021, whole genome shotgun sequence
NZ_AEHN01000021
1.4 KB
0 CDS

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contig00010, whole genome shotgun sequence
NZ_AEHN01000022
53.4 KB
57 CDS

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contig00005, whole genome shotgun sequence
NZ_AEHN01000023
98.5 KB
121 CDS

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contig00054, whole genome shotgun sequence
NZ_AEHN01000024
52.0 KB
68 CDS

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contig00025, whole genome shotgun sequence
NZ_AEHN01000025
10.3 KB
8 CDS

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contig00012, whole genome shotgun sequence
NZ_AEHN01000026
7.0 KB
9 CDS

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contig00006, whole genome shotgun sequence
NZ_AEHN01000027
10.9 KB
10 CDS

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Taxonomy

External Links

Lactobacillus iners LactinV 11V1-d

Search Genome

Sequences

PubMed Search for Lactobacillus iners LactinV 11V1-d

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