Lactobacillus iners LEAF 2053A-b

J. Craig Venter Institute

Genome Size: 1.4 megabases, Released Date: Nov. 4, 2010 #20424

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00098, whole genome shotgun sequence
NZ_AEKH01000001
16.9 KB
36 CDS

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contig00088, whole genome shotgun sequence
NZ_AEKH01000002
10.4 KB
16 CDS

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contig00033, whole genome shotgun sequence
NZ_AEKH01000003
579 bytes
2 CDS

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contig00011, whole genome shotgun sequence
NZ_AEKH01000004
60.7 KB
136 CDS

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contig00043, whole genome shotgun sequence
NZ_AEKH01000005
99.8 KB
182 CDS

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contig00028, whole genome shotgun sequence
NZ_AEKH01000006
14.3 KB
20 CDS

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contig00006, whole genome shotgun sequence
NZ_AEKH01000007
14.0 KB
24 CDS

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contig00004, whole genome shotgun sequence
NZ_AEKH01000008
16.3 KB
24 CDS

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contig00029, whole genome shotgun sequence
NZ_AEKH01000009
7.3 KB
20 CDS

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contig00050, whole genome shotgun sequence
NZ_AEKH01000010
298.0 KB
592 CDS

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contig00023, whole genome shotgun sequence
NZ_AEKH01000011
55.2 KB
104 CDS

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contig00046, whole genome shotgun sequence
NZ_AEKH01000012
57.8 KB
102 CDS

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contig00042, whole genome shotgun sequence
NZ_AEKH01000013
2.9 KB
4 CDS

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contig00048, whole genome shotgun sequence
NZ_AEKH01000014
19.9 KB
50 CDS

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contig00032, whole genome shotgun sequence
NZ_AEKH01000015
690 bytes
2 CDS

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contig00018, whole genome shotgun sequence
NZ_AEKH01000016
69.7 KB
136 CDS

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contig00040, whole genome shotgun sequence
NZ_AEKH01000017
9.7 KB
22 CDS

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contig00014, whole genome shotgun sequence
NZ_AEKH01000018
3.8 KB
10 CDS

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contig00062, whole genome shotgun sequence
NZ_AEKH01000019
2.5 KB
0 CDS

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contig00102, whole genome shotgun sequence
NZ_AEKH01000020
42.0 KB
72 CDS

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contig00015, whole genome shotgun sequence
NZ_AEKH01000021
90.5 KB
182 CDS

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contig00037, whole genome shotgun sequence
NZ_AEKH01000022
4.3 KB
4 CDS

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contig00017, whole genome shotgun sequence
NZ_AEKH01000023
1.4 KB
0 CDS

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contig00038, whole genome shotgun sequence
NZ_AEKH01000024
6.6 KB
4 CDS

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contig00049, whole genome shotgun sequence
NZ_AEKH01000025
76.8 KB
128 CDS

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contig00010, whole genome shotgun sequence
NZ_AEKH01000026
84.9 KB
172 CDS

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contig00105, whole genome shotgun sequence
NZ_AEKH01000027
4.0 KB
6 CDS

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contig00007, whole genome shotgun sequence
NZ_AEKH01000028
165.8 KB
322 CDS

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contig00013, whole genome shotgun sequence
NZ_AEKH01000029
643 bytes
0 CDS

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contig00016, whole genome shotgun sequence
NZ_AEKH01000030
1.4 KB
0 CDS

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contig00019, whole genome shotgun sequence
NZ_AEKH01000031
7.7 KB
12 CDS

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contig00012, whole genome shotgun sequence
NZ_AEKH01000032
7.1 KB
16 CDS

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contig00008, whole genome shotgun sequence
NZ_AEKH01000033
2.6 KB
8 CDS

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contig00099, whole genome shotgun sequence
NZ_AEKH01000034
54.9 KB
106 CDS

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contig00113, whole genome shotgun sequence
NZ_AEKH01000035
1.6 KB
4 CDS

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contig00030, whole genome shotgun sequence
NZ_AEKH01000036
10.4 KB
14 CDS

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contig00009, whole genome shotgun sequence
NZ_AEKH01000037
13.6 KB
22 CDS

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Taxonomy

External Links

Lactobacillus iners LEAF 2053A-b

Search Genome

Sequences

PubMed Search for Lactobacillus iners LEAF 2053A-b

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