Lactobacillus iners LEAF 2062A-h1

J. Craig Venter Institute

Genome Size: 1.3 megabases, Released Date: Nov. 4, 2010 #20425

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00034, whole genome shotgun sequence
NZ_AEKJ01000001
99.8 KB
184 CDS

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contig00085, whole genome shotgun sequence
NZ_AEKJ01000002
1.7 KB
0 CDS

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contig00022, whole genome shotgun sequence
NZ_AEKJ01000003
29.3 KB
56 CDS

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contig00055, whole genome shotgun sequence
NZ_AEKJ01000004
1.4 KB
0 CDS

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contig00005, whole genome shotgun sequence
NZ_AEKJ01000005
7.1 KB
16 CDS

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contig00090, whole genome shotgun sequence
NZ_AEKJ01000006
628 bytes
2 CDS

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contig00002, whole genome shotgun sequence
NZ_AEKJ01000007
10.2 KB
14 CDS

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contig00057, whole genome shotgun sequence
NZ_AEKJ01000008
90.6 KB
180 CDS

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contig00093, whole genome shotgun sequence
NZ_AEKJ01000009
695 bytes
0 CDS

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contig00048, whole genome shotgun sequence
NZ_AEKJ01000010
117.8 KB
230 CDS

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contig00043, whole genome shotgun sequence
NZ_AEKJ01000011
555 bytes
0 CDS

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contig00021, whole genome shotgun sequence
NZ_AEKJ01000012
3.8 KB
4 CDS

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contig00006, whole genome shotgun sequence
NZ_AEKJ01000013
123.0 KB
272 CDS

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contig00031, whole genome shotgun sequence
NZ_AEKJ01000014
94.2 KB
206 CDS

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contig00035, whole genome shotgun sequence
NZ_AEKJ01000015
114.9 KB
230 CDS

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contig00083, whole genome shotgun sequence
NZ_AEKJ01000016
917 bytes
0 CDS

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contig00045, whole genome shotgun sequence
NZ_AEKJ01000017
6.0 KB
4 CDS

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contig00046, whole genome shotgun sequence
NZ_AEKJ01000018
187.7 KB
390 CDS

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contig00026, whole genome shotgun sequence
NZ_AEKJ01000019
8.9 KB
22 CDS

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contig00008, whole genome shotgun sequence
NZ_AEKJ01000020
14.6 KB
24 CDS

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contig00098, whole genome shotgun sequence
NZ_AEKJ01000021
59.8 KB
122 CDS

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contig00058, whole genome shotgun sequence
NZ_AEKJ01000022
1.4 KB
0 CDS

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contig00033, whole genome shotgun sequence
NZ_AEKJ01000023
155.9 KB
294 CDS

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contig00012, whole genome shotgun sequence
NZ_AEKJ01000024
142.5 KB
280 CDS

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Taxonomy

External Links

Lactobacillus iners LEAF 2062A-h1

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Sequences

PubMed Search for Lactobacillus iners LEAF 2062A-h1

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