Lactobacillus iners SPIN 2503V10-D

J. Craig Venter Institute

Genome Size: 1.3 megabases, Released Date: Oct. 5, 2010 #20431

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00027, whole genome shotgun sequence
NZ_AEHR01000001
90.6 KB
95 CDS

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contig00054, whole genome shotgun sequence
NZ_AEHR01000002
98.8 KB
114 CDS

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contig00012, whole genome shotgun sequence
NZ_AEHR01000003
29.3 KB
29 CDS

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contig00083, whole genome shotgun sequence
NZ_AEHR01000004
1.1 KB
0 CDS

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contig00042, whole genome shotgun sequence
NZ_AEHR01000005
29.3 KB
33 CDS

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contig00004, whole genome shotgun sequence
NZ_AEHR01000006
84.2 KB
86 CDS

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contig00057, whole genome shotgun sequence
NZ_AEHR01000007
3.6 KB
2 CDS

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contig00002, whole genome shotgun sequence
NZ_AEHR01000008
10.2 KB
7 CDS

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contig00045, whole genome shotgun sequence
NZ_AEHR01000009
1.6 KB
1 CDS

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contig00148, whole genome shotgun sequence
NZ_AEHR01000010
796 bytes
1 CDS

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contig00058, whole genome shotgun sequence
NZ_AEHR01000011
1.4 KB
0 CDS

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contig00040, whole genome shotgun sequence
NZ_AEHR01000012
659 bytes
1 CDS

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contig00030, whole genome shotgun sequence
NZ_AEHR01000013
84.8 KB
78 CDS

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contig00147, whole genome shotgun sequence
NZ_AEHR01000014
863 bytes
1 CDS

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contig00116, whole genome shotgun sequence
NZ_AEHR01000015
7.8 KB
6 CDS

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contig00080, whole genome shotgun sequence
NZ_AEHR01000016
1.8 KB
0 CDS

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contig00011, whole genome shotgun sequence
NZ_AEHR01000017
123.8 KB
139 CDS

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contig00141, whole genome shotgun sequence
NZ_AEHR01000018
56.2 KB
50 CDS

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contig00005, whole genome shotgun sequence
NZ_AEHR01000019
65.7 KB
69 CDS

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contig00014, whole genome shotgun sequence
NZ_AEHR01000020
7.2 KB
9 CDS

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contig00029, whole genome shotgun sequence
NZ_AEHR01000021
90.9 KB
90 CDS

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contig00050, whole genome shotgun sequence
NZ_AEHR01000022
1.6 KB
0 CDS

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contig00031, whole genome shotgun sequence
NZ_AEHR01000023
44.2 KB
43 CDS

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contig00033, whole genome shotgun sequence
NZ_AEHR01000024
5.4 KB
2 CDS

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contig00013, whole genome shotgun sequence
NZ_AEHR01000025
43.6 KB
39 CDS

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contig00006, whole genome shotgun sequence
NZ_AEHR01000026
3.1 KB
3 CDS

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contig00071, whole genome shotgun sequence
NZ_AEHR01000027
114.2 KB
115 CDS

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contig00046, whole genome shotgun sequence
NZ_AEHR01000028
28.0 KB
31 CDS

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contig00026, whole genome shotgun sequence
NZ_AEHR01000029
101.7 KB
108 CDS

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contig00156, whole genome shotgun sequence
NZ_AEHR01000030
111.2 KB
117 CDS

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contig00007, whole genome shotgun sequence
NZ_AEHR01000031
10.5 KB
4 CDS

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Taxonomy

External Links

Lactobacillus iners SPIN 2503V10-D

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Sequences

PubMed Search for Lactobacillus iners SPIN 2503V10-D

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