Lactobacillus jensenii JV-V16

Baylor College of Medicine

GC Content: 34.2%, Released Date: Feb. 19, 2009 #18168

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACGQ01000001
239 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGQ01000002
530 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACGQ01000003
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000004
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACGQ01000005
77.4 KB
67 CDS

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whole genome shotgun sequence
NZ_ACGQ01000006
4.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACGQ01000007
29.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ACGQ01000008
54.2 KB
55 CDS

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whole genome shotgun sequence
NZ_ACGQ01000009
25.8 KB
32 CDS

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whole genome shotgun sequence
NZ_ACGQ01000010
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ACGQ01000011
60.3 KB
58 CDS

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whole genome shotgun sequence
NZ_ACGQ01000012
33.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ACGQ01000013
51.6 KB
50 CDS

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whole genome shotgun sequence
NZ_ACGQ01000014
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACGQ01000015
3.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACGQ01000016
225 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000017
40.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ACGQ01000018
34.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ACGQ01000019
40.6 KB
36 CDS

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whole genome shotgun sequence
NZ_ACGQ01000020
41.9 KB
37 CDS

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whole genome shotgun sequence
NZ_ACGQ01000021
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ACGQ01000022
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000023
12.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGQ01000024
5.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGQ01000025
679 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000026
149.3 KB
166 CDS

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whole genome shotgun sequence
NZ_ACGQ01000027
37.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ACGQ01000028
266 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000029
782 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000030
10.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ACGQ01000031
4.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGQ01000032
278 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000033
319 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000034
17.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACGQ01000035
5.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000036
14.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ACGQ01000037
49.3 KB
51 CDS

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whole genome shotgun sequence
NZ_ACGQ01000038
39.0 KB
38 CDS

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whole genome shotgun sequence
NZ_ACGQ01000039
540 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGQ01000040
3.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACGQ01000041
79.6 KB
78 CDS

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whole genome shotgun sequence
NZ_ACGQ01000042
221.2 KB
223 CDS

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whole genome shotgun sequence
NZ_ACGQ01000043
64.7 KB
67 CDS

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whole genome shotgun sequence
NZ_ACGQ01000044
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACGQ01000045
13.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ACGQ01000046
11.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACGQ01000047
6.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGQ01000048
157.6 KB
129 CDS

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whole genome shotgun sequence
NZ_ACGQ01000049
25.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ACGQ01000050
5.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ACGQ01000051
69.6 KB
62 CDS

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whole genome shotgun sequence
NZ_ACGQ01000052
9.9 KB
6 CDS

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Taxonomy

External Links

Lactobacillus jensenii JV-V16

Search Genome

Sequences

PubMed Search for Lactobacillus jensenii JV-V16

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