Lactobacillus plantarum JDM1

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 3.2 megabases, Released Date: July 17, 2009 #17114

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012984
3.0 MB
2948 CDS

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References

Complete genome sequence of Lactobacillus plantarum JDM1
Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhong,Y., Zhu,Y.Q., Zheng,H.J., Zhao,G.P., Wang,S.Y. and Guo,X.K. J. Bacteriol. 191 (15), 5020-5021 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus plantarum JDM1

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Sequences

References

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