Lactobacillus plantarum WCFS1

Wageningen Centre for Food Sciences

Genome Size: 3.34 megabases, GC Content: 44.4%, Released Date: Feb. 5, 2003 #17115

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_004567
3.2 MB
3007 CDS

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plasmid pWCFS101
NC_006375
1.9 KB
3 CDS

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plasmid pWCFS102
NC_006376
2.3 KB
4 CDS

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plasmid pWCFS103
NC_006377
35.2 KB
43 CDS

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References

Complete genome sequence of Lactobacillus plantarum WCFS1
Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D., Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M., Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M., Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and Siezen,R.J. Proc. Natl. Acad. Sci. U.S.A. 100 (4), 1990-1995 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus plantarum WCFS1

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Sequences

References

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