Lactobacillus rhamnosus GG

Institute of Biotechnology, University of Helsinki, Finland , DNA Sequencing and Genomics lab, Institute of Biotechnology, University of Helsinki

Genome Size: 3.0 megabases, Released Date: Sept. 2, 2009 #17118

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_013198
2.9 MB
2944 CDS

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References

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein
Kankainen,M., Paulin,L., Tynkkynen,S., von Ossowski,I., Reunanen,J., Partanen,P., Satokari,R., Vesterlund,S., Hendrickx,A.P., Lebeer,S., De Keersmaecker,S.C., Vanderleyden,J., Hamalainen,T., Laukkanen,S., Salovuori,N., Ritari,J., Alatalo,E., Korpela,R., Mattila-Sandholm,T., Lassig,A., Hatakka,K., Kinnunen,K.T., Karjalainen,H., Saxelin,M., Laakso,K., Surakka,A., Palva,A., Salusjarvi,T., Auvinen,P. and de Vos,W.M. Proc. Natl. Acad. Sci. U.S.A. 106 (40), 17193-17198 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus rhamnosus GG

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Sequences

References

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