Lactobacillus rhamnosus HN001

Fonterra Research Centre

Genome Size: 0.04 megabases, GC Content: 46.7%, Released Date: Sept. 11, 2008 #18177

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABWJ01000001
186.4 KB
173 CDS

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whole genome shotgun sequence
NZ_ABWJ01000002
161.2 KB
154 CDS

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whole genome shotgun sequence
NZ_ABWJ01000003
139.8 KB
132 CDS

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whole genome shotgun sequence
NZ_ABWJ01000004
138.1 KB
122 CDS

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whole genome shotgun sequence
NZ_ABWJ01000005
107.0 KB
113 CDS

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whole genome shotgun sequence
NZ_ABWJ01000006
97.7 KB
101 CDS

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whole genome shotgun sequence
NZ_ABWJ01000007
88.5 KB
88 CDS

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whole genome shotgun sequence
NZ_ABWJ01000008
86.0 KB
90 CDS

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whole genome shotgun sequence
NZ_ABWJ01000009
84.0 KB
87 CDS

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whole genome shotgun sequence
NZ_ABWJ01000010
82.8 KB
78 CDS

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whole genome shotgun sequence
NZ_ABWJ01000011
82.4 KB
84 CDS

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whole genome shotgun sequence
NZ_ABWJ01000012
81.8 KB
79 CDS

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whole genome shotgun sequence
NZ_ABWJ01000013
76.3 KB
77 CDS

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whole genome shotgun sequence
NZ_ABWJ01000014
73.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABWJ01000015
71.6 KB
61 CDS

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whole genome shotgun sequence
NZ_ABWJ01000016
69.8 KB
72 CDS

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whole genome shotgun sequence
NZ_ABWJ01000017
65.4 KB
68 CDS

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whole genome shotgun sequence
NZ_ABWJ01000018
59.0 KB
49 CDS

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whole genome shotgun sequence
NZ_ABWJ01000019
57.0 KB
65 CDS

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whole genome shotgun sequence
NZ_ABWJ01000020
50.8 KB
52 CDS

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whole genome shotgun sequence
NZ_ABWJ01000021
47.6 KB
45 CDS

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whole genome shotgun sequence
NZ_ABWJ01000022
43.5 KB
37 CDS

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whole genome shotgun sequence
NZ_ABWJ01000023
42.9 KB
54 CDS

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whole genome shotgun sequence
NZ_ABWJ01000024
41.3 KB
48 CDS

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whole genome shotgun sequence
NZ_ABWJ01000025
40.4 KB
58 CDS

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whole genome shotgun sequence
NZ_ABWJ01000026
40.4 KB
32 CDS

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whole genome shotgun sequence
NZ_ABWJ01000027
37.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ABWJ01000028
37.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ABWJ01000029
36.2 KB
35 CDS

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whole genome shotgun sequence
NZ_ABWJ01000030
35.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ABWJ01000031
33.5 KB
35 CDS

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whole genome shotgun sequence
NZ_ABWJ01000032
32.4 KB
35 CDS

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whole genome shotgun sequence
NZ_ABWJ01000033
31.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ABWJ01000034
30.2 KB
23 CDS

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whole genome shotgun sequence
NZ_ABWJ01000035
28.6 KB
28 CDS

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whole genome shotgun sequence
NZ_ABWJ01000036
28.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ABWJ01000037
26.6 KB
19 CDS

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whole genome shotgun sequence
NZ_ABWJ01000038
24.1 KB
27 CDS

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whole genome shotgun sequence
NZ_ABWJ01000039
21.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ABWJ01000040
21.1 KB
19 CDS

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whole genome shotgun sequence
NZ_ABWJ01000041
19.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ABWJ01000042
19.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABWJ01000043
17.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABWJ01000044
16.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ABWJ01000045
16.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ABWJ01000046
15.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ABWJ01000047
15.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABWJ01000048
14.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABWJ01000049
13.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ABWJ01000050
10.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABWJ01000051
10.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABWJ01000052
9.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABWJ01000053
9.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ABWJ01000054
9.3 KB
11 CDS

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whole genome shotgun sequence
NZ_ABWJ01000055
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABWJ01000056
6.6 KB
7 CDS

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whole genome shotgun sequence
NZ_ABWJ01000057
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABWJ01000058
4.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABWJ01000059
3.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABWJ01000060
3.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABWJ01000061
3.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABWJ01000062
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABWJ01000063
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABWJ01000064
2.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABWJ01000065
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABWJ01000066
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000067
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABWJ01000068
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ABWJ01000069
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABWJ01000070
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000071
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000072
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000073
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABWJ01000074
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000075
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000076
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABWJ01000077
889 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000078
729 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000079
714 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000080
650 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000081
468 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000082
383 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABWJ01000083
379 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000084
370 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000085
341 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABWJ01000086
339 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000087
283 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000088
274 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000089
272 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000090
252 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000091
234 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABWJ01000092
212 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000093
212 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABWJ01000094
210 bytes
1 CDS

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Taxonomy

External Links

Lactobacillus rhamnosus HN001

Search Genome

Sequences

PubMed Search for Lactobacillus rhamnosus HN001

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