Lactobacillus sakei subsp. sakei 23K

Institut National de la Recherche Agronomique (INRA)

Genome Size: 1.9 megabases, GC Content: 41.3%, Released Date: Nov. 2, 2005 #17120

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007576
1.8 MB
1879 CDS

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References

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K
Chaillou,S., Champomier-Verges,M.C., Cornet,M., Crutz-Le Coq,A.M., Dudez,A.M., Martin,V., Beaufils,S., Darbon-Rongere,E., Bossy,R., Loux,V. and Zagorec,M. Nat. Biotechnol. 23 (12), 1527-1533 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus sakei subsp. sakei 23K

Search Genome

Sequences

References

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