Lactobacillus salivarius UCC118

University College Cork

Genome Size: 2.1 megabases, GC Content: 33.0%, Released Date: March 30, 2006 #17121

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007929
1.7 MB
1717 CDS

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plasmid pMP118
NC_007930
236.8 KB
222 CDS

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plasmid pSF118-20
NC_006529
19.9 KB
27 CDS

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plasmid pSF118-44
NC_006530
43.0 KB
47 CDS

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References

From the Cover: Multireplicon genome architecture of Lactobacillus salivarius
Claesson,M.J., Li,Y., Leahy,S., Canchaya,C., van Pijkeren,J.P., Cerdeno-Tarraga,A.M., Parkhill,J., Flynn,S., O'sullivan,G.C., Collins,J.K., Higgins,D., Shanahan,F., Fitzgerald,G.F., van Sinderen,D. and O'toole,P.W. Proc. Natl. Acad. Sci. U.S.A. 103 (17), 6718-6723 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Lactobacillus salivarius UCC118

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Sequences

References

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