Leeuwenhoekiella blandensis MED217

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 39.8%, Released Date: Jan. 27, 2006 #18183

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AANC01000001
860.5 KB
844 CDS

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whole genome shotgun sequence
NZ_AANC01000002
568.9 KB
520 CDS

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whole genome shotgun sequence
NZ_AANC01000003
524.2 KB
453 CDS

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whole genome shotgun sequence
NZ_AANC01000004
383.4 KB
343 CDS

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whole genome shotgun sequence
NZ_AANC01000005
362.9 KB
305 CDS

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whole genome shotgun sequence
NZ_AANC01000006
294.9 KB
264 CDS

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whole genome shotgun sequence
NZ_AANC01000007
279.7 KB
255 CDS

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whole genome shotgun sequence
NZ_AANC01000008
252.1 KB
185 CDS

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whole genome shotgun sequence
NZ_AANC01000009
222.4 KB
209 CDS

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whole genome shotgun sequence
NZ_AANC01000010
138.4 KB
118 CDS

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whole genome shotgun sequence
NZ_AANC01000011
106.9 KB
98 CDS

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whole genome shotgun sequence
NZ_AANC01000012
100.3 KB
98 CDS

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whole genome shotgun sequence
NZ_AANC01000013
28.9 KB
32 CDS

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whole genome shotgun sequence
NZ_AANC01000014
10.1 KB
5 CDS

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whole genome shotgun sequence
NZ_AANC01000015
5.2 KB
6 CDS

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References

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Gomez-Consarnau,L., Gonzalez,J.M., Coll-Llado,M., Gourdon,P., Pascher,T., Neutze,R., Pedros-Alio,C. and Pinhassi,J. Nature 445 (7124), 210-213 (2007)
PubMed, PubGet, HubMed
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Gomez-Consarnau,L., Gonzalez,J.M., Coll-Llado,M., Gourdon,P., Pascher,T., Neutze,R., Pedros-Alio,C. and Pinhassi,J. Nature 445 (7124), 210-213 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Leeuwenhoekiella blandensis MED217

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Sequences

References

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