Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'

Institut Pasteur , Genomics Plate-form - Institut Pasteur

Genome Size: 3.95 megabases, GC Content: 38.9%, Released Date: Feb. 13, 2008 #17134

Completed genome

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

chromosome I
NC_010602
3.4 MB
3391 CDS

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chromosome II
NC_010843
271.1 KB
276 CDS

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plasmid p74
NC_010844
72.4 KB
59 CDS

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References

Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis
Picardeau,M., Bulach,D.M., Bouchier,C., Zuerner,R.L., Zidane,N., Wilson,P.J., Creno,S., Kuczek,E.S., Bommezzadri,S., Davis,J.C., McGrath,A., Johnson,M.J., Boursaux-Eude,C., Seemann,T., Rouy,Z., Coppel,R.L., Rood,J.I., Lajus,A., Davies,J.K., Medigue,C. and Adler,B. PLoS ONE 3 (2), E1607 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'

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Sequences

References

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