Leptospira borgpetersenii serovar Hardjo-bovis JB197

Monash University , Victorian Bioinformatics Consortium , Australian Genome Research Facility , National Animal Disease Center

Genome Size: 3.9 megabases, GC Content: 40.2%, Released Date: Oct. 13, 2006 #17135

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome 1
NC_008510
3.4 MB
2645 CDS

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chromosome 2
NC_008511
292.7 KB
235 CDS

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References

Genome reduction in Leptospira borgpetersenii reflects limited transmission potential
Bulach,D.M., Zuerner,R.L., Wilson,P., Seemann,T., McGrath,A., Cullen,P.A., Davis,J., Johnson,M., Kuczek,E., Alt,D.P., Peterson-Burch,B., Coppel,R.L., Rood,J.I., Davies,J.K. and Adler,B. Proc. Natl. Acad. Sci. U.S.A. 103 (39), 14560-14565 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Leptospira borgpetersenii serovar Hardjo-bovis JB197

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Sequences

References

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