Leptotrichia hofstadii F0254

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Released Date: Aug. 11, 2009 #18187

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVB02000001
657 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000002
682 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVB02000003
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVB02000004
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVB02000005
110.6 KB
120 CDS

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whole genome shotgun sequence
NZ_ACVB02000006
214.4 KB
267 CDS

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whole genome shotgun sequence
NZ_ACVB02000007
275.6 KB
382 CDS

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whole genome shotgun sequence
NZ_ACVB02000008
337.2 KB
423 CDS

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whole genome shotgun sequence
NZ_ACVB02000009
135.5 KB
160 CDS

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whole genome shotgun sequence
NZ_ACVB02000010
227.4 KB
243 CDS

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whole genome shotgun sequence
NZ_ACVB02000011
112.3 KB
135 CDS

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whole genome shotgun sequence
NZ_ACVB02000012
619 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000013
53.4 KB
60 CDS

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whole genome shotgun sequence
NZ_ACVB02000014
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000015
984 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000016
877 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000017
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000018
82.6 KB
101 CDS

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whole genome shotgun sequence
NZ_ACVB02000019
427 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000020
3.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000021
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000022
624 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000023
373 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVB02000024
178.5 KB
222 CDS

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whole genome shotgun sequence
NZ_ACVB02000025
3.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVB02000026
264.2 KB
294 CDS

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whole genome shotgun sequence
NZ_ACVB02000027
45.4 KB
57 CDS

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whole genome shotgun sequence
NZ_ACVB02000028
916 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000029
228.2 KB
234 CDS

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whole genome shotgun sequence
NZ_ACVB02000030
683 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000031
788 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000032
27.8 KB
37 CDS

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whole genome shotgun sequence
NZ_ACVB02000033
690 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000034
52.5 KB
59 CDS

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whole genome shotgun sequence
NZ_ACVB02000035
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVB02000036
23.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ACVB02000037
748 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVB02000038
619 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000039
606 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVB02000040
605 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000041
570 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVB02000042
551 bytes
1 CDS

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Taxonomy

External Links

Leptotrichia hofstadii F0254

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Sequences

PubMed Search for Leptotrichia hofstadii F0254

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