Limnobacter sp. MED105

J. Craig Venter Institute

GC Content: 52.2%, Released Date: June 26, 2007 #18189

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABCT01000001
597.0 KB
584 CDS

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whole genome shotgun sequence
NZ_ABCT01000002
255.0 KB
241 CDS

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whole genome shotgun sequence
NZ_ABCT01000003
239.0 KB
227 CDS

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whole genome shotgun sequence
NZ_ABCT01000004
220.4 KB
225 CDS

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whole genome shotgun sequence
NZ_ABCT01000005
203.8 KB
206 CDS

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whole genome shotgun sequence
NZ_ABCT01000006
168.6 KB
168 CDS

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whole genome shotgun sequence
NZ_ABCT01000007
158.7 KB
160 CDS

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whole genome shotgun sequence
NZ_ABCT01000008
140.1 KB
120 CDS

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whole genome shotgun sequence
NZ_ABCT01000009
120.3 KB
102 CDS

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whole genome shotgun sequence
NZ_ABCT01000010
117.3 KB
117 CDS

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whole genome shotgun sequence
NZ_ABCT01000011
115.4 KB
100 CDS

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whole genome shotgun sequence
NZ_ABCT01000012
114.1 KB
116 CDS

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whole genome shotgun sequence
NZ_ABCT01000013
111.9 KB
109 CDS

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whole genome shotgun sequence
NZ_ABCT01000014
100.2 KB
93 CDS

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whole genome shotgun sequence
NZ_ABCT01000015
87.4 KB
87 CDS

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whole genome shotgun sequence
NZ_ABCT01000016
59.4 KB
54 CDS

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whole genome shotgun sequence
NZ_ABCT01000017
54.1 KB
51 CDS

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whole genome shotgun sequence
NZ_ABCT01000018
50.8 KB
49 CDS

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whole genome shotgun sequence
NZ_ABCT01000019
44.7 KB
50 CDS

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whole genome shotgun sequence
NZ_ABCT01000020
40.6 KB
41 CDS

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whole genome shotgun sequence
NZ_ABCT01000021
39.0 KB
42 CDS

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whole genome shotgun sequence
NZ_ABCT01000022
31.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ABCT01000023
29.3 KB
39 CDS

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whole genome shotgun sequence
NZ_ABCT01000024
28.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ABCT01000025
26.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ABCT01000026
22.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ABCT01000027
19.3 KB
19 CDS

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whole genome shotgun sequence
NZ_ABCT01000028
18.2 KB
24 CDS

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whole genome shotgun sequence
NZ_ABCT01000029
14.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ABCT01000030
14.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABCT01000031
12.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ABCT01000032
9.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ABCT01000033
8.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABCT01000034
7.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABCT01000035
7.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ABCT01000036
4.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABCT01000037
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABCT01000038
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABCT01000039
2.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABCT01000040
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCT01000041
1.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABCT01000042
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCT01000043
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCT01000044
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCT01000045
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCT01000046
869 bytes
1 CDS

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Taxonomy

External Links

Limnobacter sp. MED105

Search Genome

Sequences

PubMed Search for Limnobacter sp. MED105

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