Listeria monocytogenes 10403S

Broad Institute

Genome Size: 2.9 megabases, GC Content: 37.9%, Released Date: Aug. 22, 2006 #18191

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AARZ02000001
478.9 KB
500 CDS

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whole genome shotgun sequence
NZ_AARZ02000002
405.2 KB
422 CDS

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whole genome shotgun sequence
NZ_AARZ02000003
356.4 KB
367 CDS

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whole genome shotgun sequence
NZ_AARZ02000004
223.6 KB
226 CDS

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whole genome shotgun sequence
NZ_AARZ02000005
199.7 KB
209 CDS

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whole genome shotgun sequence
NZ_AARZ02000006
185.5 KB
193 CDS

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whole genome shotgun sequence
NZ_AARZ02000007
175.0 KB
168 CDS

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whole genome shotgun sequence
NZ_AARZ02000008
163.8 KB
166 CDS

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whole genome shotgun sequence
NZ_AARZ02000009
158.2 KB
140 CDS

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whole genome shotgun sequence
NZ_AARZ02000010
134.6 KB
130 CDS

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whole genome shotgun sequence
NZ_AARZ02000011
83.2 KB
92 CDS

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whole genome shotgun sequence
NZ_AARZ02000012
70.3 KB
79 CDS

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whole genome shotgun sequence
NZ_AARZ02000013
68.7 KB
68 CDS

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whole genome shotgun sequence
NZ_AARZ02000014
41.7 KB
41 CDS

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whole genome shotgun sequence
NZ_AARZ02000015
27.8 KB
25 CDS

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whole genome shotgun sequence
NZ_AARZ02000016
15.7 KB
10 CDS

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whole genome shotgun sequence
NZ_AARZ02000017
7.4 KB
11 CDS

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whole genome shotgun sequence
NZ_AARZ02000018
4.6 KB
5 CDS

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whole genome shotgun sequence
NZ_AARZ02000019
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AARZ02000020
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AARZ02000021
1.0 KB
2 CDS

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Taxonomy

External Links

Listeria monocytogenes 10403S

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Sequences

PubMed Search for Listeria monocytogenes 10403S

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