Listeria monocytogenes F6900

Broad Institute

GC Content: 37.8%, Released Date: Oct. 16, 2006 #18192

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AARU02000001
1.2 MB
1234 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000002
511.9 KB
535 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000003
438.6 KB
459 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000004
171.0 KB
170 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000005
126.4 KB
127 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000006
122.2 KB
130 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000007
98.4 KB
96 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000008
67.0 KB
83 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000009
57.2 KB
51 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000010
38.0 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000011
24.4 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000012
15.9 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000013
15.1 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000014
4.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000015
4.0 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000016
3.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000017
2.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000018
1.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000019
1.4 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000020
1.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000021
960 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000022
840 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AARU02000023
660 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Listeria monocytogenes F6900

Search Genome

Sequences

PubMed Search for Listeria monocytogenes F6900

Related Genomes