Listeria monocytogenes Finland 1988

Broad Institute

GC Content: 37.9%, Released Date: Sept. 3, 2008 #18204

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AART01000001
301.9 KB
297 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000002
186.7 KB
182 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000003
168.6 KB
181 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000004
133.5 KB
124 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000005
131.9 KB
118 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000006
117.7 KB
125 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000007
110.1 KB
94 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000008
108.7 KB
130 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000009
104.1 KB
112 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000010
98.5 KB
90 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000011
90.5 KB
94 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000012
81.4 KB
69 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000013
80.3 KB
69 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000014
72.8 KB
68 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000015
70.9 KB
69 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000016
65.4 KB
65 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000017
65.3 KB
66 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000018
62.9 KB
63 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000019
61.8 KB
61 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000020
60.2 KB
54 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000021
58.9 KB
53 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000022
57.3 KB
47 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000023
50.7 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000024
47.8 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000025
34.0 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000026
29.4 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000027
29.3 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000028
27.3 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000029
26.4 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000030
23.7 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000031
20.5 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000032
19.9 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000033
19.8 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000034
18.5 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000035
17.8 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000036
16.5 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000037
16.0 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000038
15.5 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000039
12.7 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000040
12.7 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000041
6.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000042
6.6 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000043
5.7 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000044
5.3 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000045
4.8 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000046
4.7 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000047
3.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000048
1.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AART01000049
1.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Listeria monocytogenes Finland 1988

Search Genome

Sequences

PubMed Search for Listeria monocytogenes Finland 1988

Related Genomes